rs46355880 SNP Detail

Summary

• ID
  rs46355880
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:67061273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATAGTCC AGATCACAAA
  TATTGCTGTG GTTAGGAGGA GTGTGCCAGG CCCAAATCTC TTTTCTACAA GTTGCTGGGT
  GTGTGGTTTT TCACAAGTCA TTGGACTTTT GGGCTCTTTT CTCCTCTTCT CTTTCCATGT
  GTGTCTGCGT GCAGCCTCCA TAAAGGTCAG AGGTCAACTT GGGGTCATTC CTCAAAAGCT
  M
  TTCATCTTGT TTGTTTGTTT GTTTGTTTTT TGAGACAGGG TCTTTCACTG GCCTGAGGAT
  CCCCGATTTA GTAAGGCTAG TTGGCCAGCA GCAAGCCACG GGGATCCTCC TGTCTCTGCC
  CCCTGGTGCC AGGATTACAG GTGTGCTCTA CCTTGCCTGG CTTTTTAAAT GGACTCTGGG
  ATCAAACTCA TGCTCGCTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss136578020	ENSMUSSNP1268017	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs46355880					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:67061273 () rs orientation: forward

Symbol	Name	Function Class
D9Dcr5	DNA segment, Chr 9, Derry C. Roopenian 5	1574 bp proximal
D9Mit302	DNA Segment, Chr 9, Massachusetts Institute of Technology 302	1571 bp proximal
D9Mit302.1	DNA segment, Chr 9, Massachusetts Institute of Technology 302.1	1350 bp proximal
Gm19299	predicted gene, 19299	within coordinates
Gm68695	predicted gene, 68695	within coordinates
Rr681887	regulatory region 681887	301 bp distal
Rr681888	regulatory region 681888	113 bp proximal
Tssr90326	transcription start site region 90326	1228 bp downstream
Tssr90327	transcription start site region 90327	1255 bp downstream