rs46356561 SNP Detail

Summary

• ID
  rs46356561
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:83717599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGCTTGGG AGATGTAAGG AGATAAGCTG CAGAATCAGA
  GAGAGCAAGG CCATCCTAGG CTACTTAACA CCCTTACTCA AAACACAAAA GCGTCATGAG
  G
  GCATTATCTT CCAGGTTCAC ACAGTGTAAC CTCAATGCTG TTTCATACTG GGAAGAATAG
  ATGTTTTTGG TTCGTTGAAA CTTTGTTCTG GTAAATTAC                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136709569	ENSMUSSNP1485351	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss323046434	CHEV_9_83729153	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46356561					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:83717599 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22096	CpG island 22096	501 bp distal
Gm57060	predicted gene, 57060	948 bp upstream
Rr383689	regulatory region 383689	191 bp downstream
Rr683950	regulatory region 683950	959 bp distal
Rr683951	regulatory region 683951	818 bp distal
Rr683952	regulatory region 683952	within coordinates
Tssr86358	transcription start site region 86358	878 bp downstream
Tssr86359	transcription start site region 86359	810 bp downstream
Tssr90761	transcription start site region 90761	980 bp upstream
Ttk	Ttk protein kinase	within coordinates