rs46356778 SNP Detail

Summary

• ID
  rs46356778
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:54867823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGGCAGCA CCCTATACTC
  CGGCTTTCAG CTGCCTTTTC TACCTGTGCC CCCTCTTCAC CATCTAGCCA TCCTTGGACC
  CATCAATCCC TCATCTCTCG TTCATATACT TGCCAGTTTC TCTGCCTCAG AAGTGCCCTT
  CTCCTGGGTA TCTGTCTCTC TTTTGATTGA ATGTTTTCTC ATTTGGCTCC TATAGAAGAA
  Y
  AATCTGCTGT GCGCTCTCTA GGCTCCTTGC CCTGCTGATT TTCTCCATAA CACGCCTCAC
  TGGCTGTCAT TCTGTCCATC TCCTGGACGA CGGTTCCAGA GAAAGGACTT TGTTCTCTTT
  CAGTAGCTGC AACCTAGTTC CAATACAGGA ACTGGCACAT TCAAGGTAAT AAACACTGAT
  ACATGGATAA ACAATGTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61403640	NES16782420	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46356778					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61403640	NES16782420	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:54867823 () rs orientation: forward

Symbol	Name	Function Class
Rr204186	regulatory region 204186	within coordinates
Rr209620	regulatory region 209620	378 bp proximal