rs46357657 SNP Detail

Summary

• ID
  rs46357657
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28853103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTC AGGAGGGACT GTCAAGATCA
  R
  CCTCAGCTAC CTCGCAAGTT GAAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148642677	ENSMUSSNP2020305	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss322127371	CHEV_7_29938697	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46357657					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28853103 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18740	CpG island 18740	1621 bp proximal
Fam98c	family with sequence similarity 98, member C	within coordinates
Rasgrp4	RAS guanyl releasing protein 4	within coordinates
Rr644490	regulatory region 644490	529 bp proximal
Rr644491	regulatory region 644491	1512 bp proximal
Tssr65599	transcription start site region 65599	1965 bp upstream
Tssr65600	transcription start site region 65600	1993 bp upstream
Tssr71610	transcription start site region 71610	1919 bp downstream
Tssr71611	transcription start site region 71611	1944 bp downstream