rs46359285 SNP Detail

Summary

• ID
  rs46359285
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:55253317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGGCAAAC CGTTGGCACC
  ATGGATGATG AGAGTGATGA GAGTTGTCTC AGGGATGCGC TCACTCTGAC ACAGCGGTAT
  CGTATGTCAG ATGAGAGGGA GGGTCAGACG CTGCAGGTTG GCTGGTTCCG GACAGGAGGC
  TAACCCCAAA TTACTCTTCA GAATGAGCTT TGTAGGGAGA GTCTCGTGAC CATGGCGGGC
  S
  GTGACCCGGC CTTAAGGTGG GACAATGTTC CGAGCAGAGC TAGCGTCACA TGTACAATGT
  GGCTGGGGCA AAGGCAGCCG TAAAGTTTGG CGATGAAATC TCCGGTCTTT TCCAGTAAAT
  TGGGGGGGGT GTGGTGGGAG GAGACTGGCT GTGTGCCGAG GCTGCCTGCC CCTGTGCGGG
  GGGAAAACGA CCCAAAAGTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss139575846	ENSMUSSNP3780340	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss324641580	CHEV_14_55634697	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46359285					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55253317 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6482	CpG island 6482	within coordinates
Gm63347	predicted gene, 63347	59 bp upstream
Ngdn	neuroguidin, EIF4E binding protein	Intron
Rr369830	regulatory region 369830	666 bp downstream
Rr369831	regulatory region 369831	237 bp downstream
Rr404108	regulatory region 404108	1438 bp downstream
Rr492392	regulatory region 492392	396 bp distal
Rr492393	regulatory region 492393	693 bp distal
Rr492394	regulatory region 492394	70 bp distal
Rr492395	regulatory region 492395	within coordinates
Rr492396	regulatory region 492396	298 bp proximal
Tssr125743	transcription start site region 125743	289 bp downstream