rs46360044 SNP Detail

Summary

• ID
  rs46360044
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40504309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGCTTTG ATGCTTTTGC
  TAAACTCAAA ATATTAGTTT TATTTTACTG TTTTGAAAGG TTCAAAGCAT GATCCATGTA
  AAAATGTCTT CTGTGGGGCT TTCTCCCATT TCTACTTTTG TTCCCCTCAT TTCTTCAAAG
  TGCTTGTCCA GGCAGAGCTG ACCTTATTTG CTTACCAGTT ACAGGTAAAC AAAGCGTTTC
  Y
  TCGTGTTGCC TCTTGTAGCC ATCTCTGTAT TAGATTAGGA AGGGAAGGAG CCGTCCTACT
  GTCCAGTTTG TGAGTTCTGG TAGAAAGAGT GTTGAAGTTT GTTAAATGCT TGTTTTCCAT
  GTATCAAAAT GTTATGCCTT TCCTATTTAT TATTGTATGA CAAATTATTT TTCACTGGGC
  AAAAATAATT GTGCCATTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60721685	NES16361126	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46360044					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60721685	NES16361126	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40504309 () rs orientation: forward

Symbol	Name	Function Class
Il1rl1	interleukin 1 receptor-like 1	within coordinates
Il18r1	interleukin 18 receptor 1	403 bp upstream
Rr16188	regulatory region 16188	292 bp proximal
Rr29358	regulatory region 29358	491 bp proximal
Rr33590	regulatory region 33590	1892 bp proximal
Rr371160	regulatory region 371160	104 bp upstream
Tssr6465	transcription start site region 6465	492 bp upstream
Tssr6466	transcription start site region 6466	554 bp upstream
Tssr6467	transcription start site region 6467	816 bp upstream
Tssr6468	transcription start site region 6468	827 bp upstream
Tssr6469	transcription start site region 6469	920 bp upstream
Tssr6470	transcription start site region 6470	939 bp upstream
Tssr6471	transcription start site region 6471	1031 bp upstream
Tssr6472	transcription start site region 6472	1145 bp upstream