rs46360675 SNP Detail

Summary

• ID
  rs46360675
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45511254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGGAGAA CTGTGAGCTG
  CCTCAGCTAA TTAGGAGTCT CTGCTCAAAA AGCATCCCGC TTTCTGTCCT TCGAAAAGAC
  CAGGAACTCA TCCCCACTCC TTGGGGACCC CTTCTCCTGT CCCCTTGAAC TTCTGACTTG
  CCTTGAGAGT CTTGTTCGCT TGCAAAAATG TGCCTCTTCC AGGAAGGCTA CCTGGATTCA
  Y
  CTGCTTGCTT CCAACTGTCC CTTTTCTATG AAATCAAAAG TGCCCTTGAG TCTTTTTATA
  GGACACCTAC AATTATCAAT GGAATGTCAG AACACCTGTC CCCTGTTTGC AGCCACAGAG
  CCACCAGAGC GGAAAAAATC ATCTGGAGTG AAGATTTCCT TTAGAATCTG ATAAATGAGA
  GAAGGAGGGG CAGGAGTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136415386	ENSMUSSNP5427041	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46360675					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45511254 () rs orientation: forward

Symbol	Name	Function Class
Dscaml1	DS cell adhesion molecule like 1	within coordinates
Rr195123	regulatory region 195123	1347 bp proximal
Rr200398	regulatory region 200398	454 bp distal
Rr200399	regulatory region 200399	747 bp proximal
Rr203915	regulatory region 203915	1538 bp distal