rs46361422 SNP Detail

Summary

• ID
  rs46361422
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164789529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTTCCAA TCACAAACCT
  GACACCATCA ACTGAGGTCT CGTGAACACT GCTGAAAGTG GTTTTTCTGT GTTTCGAGAG
  TCTCATTTTA TCCTCAGATC AATATAGGGA CAAAGGCTTG AGCGACAAAG GGTCTGTTTT
  TGTTCTTTAA ACAGAAGAGG AAGGATAGTG CTAGCCTGAG AAGGATGAAG CTTCTGCTTG
  Y
  TCCCACATGT GTGTGTCCCC CCGCCCCCCA GGCTCATCTT TCCTTCCCCA AGGAGTCAGC
  CTGCTGGAGC TAGGGGTTTG CCCCATGGAA TTCCCCAAAT CCTGCCTCAA AGAGCCTGCT
  CCCAGAGGCC AGGAGAGGAA GCTGAGTCAA AGACTCTATC AGGGGGCGGG GATGAGAGGA
  TAGAACCTAC AGTGTGGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	MSM/Ms
ss148233526	ENSMUSSNP2676019	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	MSM/Ms
rs46361422					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164789529 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12679	CpG island 12679	1479 bp proximal
D2Dcr116	DNA Segment, Chr 2, Derry C. Roopenian 116	451 bp proximal
D2Mit1000	DNA segment, Chr 2, Massachusetts Institute of Technology 1000	453 bp proximal
Mmp9	matrix metallopeptidase 9	within coordinates
Tssr21688	transcription start site region 21688	534 bp downstream
Tssr21689	transcription start site region 21689	132 bp upstream
Tssr21690	transcription start site region 21690	622 bp upstream