rs46361691 SNP Detail

Summary

• ID
  rs46361691
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:72155086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCCCTACT GCAGCGCCTC
  TCCCACAGCT CAGCCCAGGC TTCAACCTCC GCCCTCCTTC CTCATTTCAG CCCCTGCTGT
  AGCCTCTTGC CTCCCTCCCA GCCCCCCAGC TCAGCCAATG CTGCAGCTGC CCCCCCTCCT
  CCCTCTTCTC CTGAGGAAAC ATTCAGCCTG GAGGAGAGTG AGCTCAGAGA CTTAGAAGAT
  Y
  CCAGGACCTT AAAACCTGTT GGTAGGCCCT CCAACTCCTA AATGCCAGGA TCAGGTGTAA
  ATCTCCTAGG AGCGTCCCCA ACCACGCCCT TCCTCAGAAG TTACCTCAAA AACTTGGTGG
  TCTTAACTCT GAGTCCCAGG CCCTAGTAGC CTGCTGGAGG GAGAAGTAAG CTCCTAAACC
  GGAAACTGAG TCCTCCTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60630723	NES16282514	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46361691					SNP	C	C	C	C	C	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60630723	NES16282514	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:72155086 () rs orientation: forward

Symbol	Name	Function Class
B3gnt3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	653 bp upstream
Cpgi20570	CpG island 20570	606 bp distal
Gm18860	predicted gene, 18860	1763 bp downstream
Rr382258	regulatory region 382258	1095 bp downstream
Rr665157	regulatory region 665157	664 bp distal
Rr665158	regulatory region 665158	163 bp distal
Rr665159	regulatory region 665159	450 bp distal
Rr665160	regulatory region 665160	232 bp distal
Rr665161	regulatory region 665161	837 bp proximal
Rr665162	regulatory region 665162	838 bp proximal
Tssr81749	transcription start site region 81749	688 bp upstream
Tssr81750	transcription start site region 81750	658 bp upstream
Tssr81751	transcription start site region 81751	601 bp upstream
Tssr81752	transcription start site region 81752	164 bp downstream