rs46362001 SNP Detail

Summary

• ID
  rs46362001
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165469971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCGCACCCGA AGCGAGAATC ATACCCCTAG ACCAACGAGC
  CGCTCTCGGT GACGACGCTC TCAGGGCCTC CCTTAAGGCT TCCGCGGGGC TGACCTGGTC
  Y
  GGAAACCATC TCGCGCGAAC AGTTCTTTTG GTTCCGAGGC TCTGGGGCCC GGAACCCCTT
  CCCGCCGGGC CGAAGAAGGC CGGGAGGACG CGCCTTTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146004020	ENSMUSSNP1374060	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46362001					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165469971 () rs orientation: forward

Symbol	Name	Function Class
Cpgi953	CpG island 953	within coordinates
Gm18407	predicted gene, 18407	1497 bp downstream
n-TPagg2	nuclear encoded tRNA proline 2 (anticodon AGG)	697 bp downstream
n-TPcgg2	nuclear encoded tRNA proline 2 (anticodon CGG)	60 bp upstream
Rr396497	regulatory region 396497	723 bp downstream
Rr396498	regulatory region 396498	18 bp downstream
Rr422408	regulatory region 422408	818 bp distal
Rr422409	regulatory region 422409	within coordinates