rs46363676 SNP Detail

Summary

• ID
  rs46363676
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:98762331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA TACTGGAGTT GGTGTGTAAT
  R
  CATGAGAGAA TAATTTTTTT AAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135527786	ENSMUSSNP2831734	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss320845381	CHEV_3_98658938	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46363676					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:98762331 () rs orientation: forward

Symbol	Name	Function Class
Gm65690	predicted gene, 65690	within coordinates
Hsd3b1	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	within coordinates
Rr1170	regulatory region 1170	36 bp proximal
Rr581744	regulatory region 581744	934 bp distal
Rr581745	regulatory region 581745	within coordinates
Rr581746	regulatory region 581746	1630 bp proximal
Tssr34708	transcription start site region 34708	1872 bp upstream
Tssr34709	transcription start site region 34709	1725 bp upstream
Tssr34710	transcription start site region 34710	1668 bp upstream
Tssr34711	transcription start site region 34711	1051 bp downstream