rs46364662 SNP Detail

Summary

• ID
  rs46364662
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:107462196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTCATTA TTTGTACTTT
  AAGAACTGAG TGGAATGAGC AAAAGAATGA ATTCCGTATT ACATTATTAT ATCTTATGTC
  AGCAAAATAG CAGATGCTTA TGTTAGCCAC ATGGGGGCAT CAGATTGTTT CATATGAAAG
  GGATATCAAA AAATCAGTTA CTTTAATAAA AACCGAGGTT CTCCCGGTTC CTTCGAGCTC
  R
  TCGTCTCTGC CGTCCTCTGA CTTTTAATTT CCAGGACTTT CCTTCTGCCA TGTCGTCTGA
  AGAAGGGAAA CTCTTCGTAG GAGGGCTCAA CTTCAACACC GATGAACAGG CACTTGAAGA
  CCACTTCAGC AGCTTTGGGC CTATCTCTGA GGTGGTTGTT GTCAAGGACC GGGAGACTCA
  AAGATCCCAG GGTTTTGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61045671	NES16080033	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46364662					SNP	A	A	A	A	A	A	G	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61045671	NES16080033	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:107462196 () rs orientation: forward

Symbol	Name	Function Class
Gm10156	predicted gene 10156	50 bp upstream
Or5p5c-ps1	olfactory receptor family 5 subfamily P member 5C, pseudogene 1	990 bp upstream
Rr652939	regulatory region 652939	77 bp distal
Tssr68454	transcription start site region 68454	22 bp downstream