rs46365675 SNP Detail

Summary

• ID
  rs46365675
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:35113013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTCTGCA ACCACAGTGG
  AGGGTCCCAA TCTCTCTGGT CTGGACTTTT CTTTCTCTCT CTCTAGAAGG CACCTCCCAA
  GAAACCTTAC ACTGTGATTC TAGCCAATCT AAAAGCTGTA AAGTAAATCC ATATGAGGAT
  CCTGGGTTCA TTATTCTTAG GACAAGCCTT GGATGTAGGA CTTAAGTGGC AACTCCTTTT
  R
  ACAATCAGTA CCATGTCTCA CCAGAAAGAG TCACAGAAGT GGACAGATCC ATTCTAACAG
  AGGATAAAAA CAGAATGTGG TGGTAACGCC ACCACCTACA ACCATCCCAG TAGGCTACTT
  GCTCTATAAA GTAACACAAG CTACAGCTAT CTAGCTGATA TATCAGAGAG AACAATTAAG
  CTTTACTCTT AAAAAGACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60718114	NES16346987	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A		G	G	A	G
ss148903639	ENSMUSSNP5205140	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46365675					SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60718114	NES16346987	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:35113013 () rs orientation: forward

Symbol	Name	Function Class
D1Mit243	DNA segment, Chr 1, Massachusetts Institute of Technology 243	769 bp proximal
Gm53547	predicted gene, 53547	within coordinates