rs46365810 SNP Detail

Summary

• ID
  rs46365810
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30066236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGATAGTGGC TCTAGGTAGC ACAGATTCTA AGGAAACTGA
  AGAGCAATTG ATTGCACTCC CATCCCCCGT CCCCTTGGTA CTGTCCGACT CTTTACAACA
  Y
  GCCTGTGTGA TTTTTTTTTT TAAGGATAAA AAGCCAACAT GATGACCCTG CATGCAATTG
  CATGACATCA CAGGGTTTGG AAAGCCAAGG TTCTGGATGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60556117	NES16574249	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46365810					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60556117	NES16574249	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30066236 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8930	CpG island 8930	1888 bp proximal
Gm56908	predicted gene, 56908	within coordinates
Mdga1	MAM domain containing glycosylphosphatidylinositol anchor 1	within coordinates
Rr330462	regulatory region 330462	636 bp distal
Rr330463	regulatory region 330463	1165 bp proximal
Rr341132	regulatory region 341132	436 bp distal
Rr341133	regulatory region 341133	1506 bp proximal
Rr392501	regulatory region 392501	within coordinates
Rr392502	regulatory region 392502	1521 bp upstream
Tssr143596	transcription start site region 143596	727 bp downstream
Tssr143597	transcription start site region 143597	704 bp downstream
Tssr143598	transcription start site region 143598	958 bp upstream