rs46366454 SNP Detail

Summary

• ID
  rs46366454
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124674046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTGATAC AACGTGGATG
  ATGGGAATTG AACTCAGGAC CTCTGAAAGA GCAGTCAGTG CTCTTAACCA CTGTGTCATC
  TCAGGAGTGG GGGTGGGGGT TTCTTAATTG GGCTCCCCCC TACTCAGATG ATTCTAGTTT
  GTGTTCACAA AAAACTAACC ACCATGCCTG AGTCATCTGA GTTCAGAAAT TAGAAGTGAG
  C
  ACACCTCTGC CTCTGAGGTC AGTACTGTGA AGGGTTCTTC TTAAACAATA AAGTGAAAGC
  CAGGCACAGA GAGGAGGCAG ATCTCTGTGA TATCTGCCTG AGGTTAGCCT GGTCTACACA
  GTAAGTTCCA GAACCCTGTC TCAAAAAACA AGCAAACAAA AACAAGGGTC CCACGTGTGC
  TCTCAGCATC ACAGTTACTC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145836451	ENSMUSSNP1728627	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46366454					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124674046 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21263	CpG island 21263	1435 bp proximal
Gm45890	predicted gene 45890	1483 bp upstream
Nup133	nucleoporin 133	within coordinates
Rr672577	regulatory region 672577	1393 bp proximal
Rr672578	regulatory region 672578	1948 bp proximal
Rr672579	regulatory region 672579	1968 bp proximal
Tssr83414	transcription start site region 83414	1894 bp downstream