rs46366623 SNP Detail

Summary

• ID
  rs46366623
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:4550247 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      C TATTACGTTT GTTCTAGCTT ATTCTTCTCG TTTTTTAACC
  TATTCAATAG TACAACTCAA GAGAATGTGT GAATTTTCCT TAGTCAAAAA CAGCTAACTC
  Y
  TAAGAATCAG TTCGGGCCCT TGAGAAAATA AAGCTGAGAC AACTCGAGAT TCCGGATTCA
  CCCCAAACCC TCCTCCCTCT GAAGACTGTG TTAAAGAAAT T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146740620	ENSMUSSNP5094505	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46366623					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:4550247 () rs orientation: reverse

Symbol	Name	Function Class
Rr215037	regulatory region 215037	1447 bp distal
Rr215038	regulatory region 215038	154 bp proximal
Rr222800	regulatory region 222800	425 bp distal
Rr227786	regulatory region 227786	1555 bp distal
Rr227787	regulatory region 227787	754 bp proximal