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rs46369899 SNP Detail
Summary
  • ID
    rs46369899
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:91984578 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGAATGACAC ACAATAGTGC
    CTACTGCACT CCTGAAAGAG ACTTACCACA TTTCCAAGTG GCTGATGAAC AGTGCAAGCT
    AGAGACACAG TCTATATCTT CATCATGTCA TATGACCAAG TTTTGGCCCA TATGCAGGAC
    TGGTGTATGC CATTTAGCGT TCAGGATGTA CTCACCAAGC ATACAAATTT GCTGTCTCAG
    Y
    TCAAATAACA ATACAATGAG ATAACATGTA TTCTACATAT AAGTCATAAC TTAAGCCCGA
    CATGGTCCAG CCTTTCCTAG AACACTACCT CTTCCACCAG CTACGTGATG TCCTCTGATT
    TGGCTCTAAC ACTATCTGCC ACATTGTTCA CATTGATACT ACTGTAGAGA ATGGGGGAAC
    TTCAGGCCTA AATTATTAAA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss60764385 NES16407957 PERLEGEN MM_PANEL2 f SNP C C C C C C C C C T C C T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs46369899 SNP C C C C C C C C C T C C T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60764385 NES16407957 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:91984578 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Hdac4 histone deacetylase 4 within coordinates
Rr23700 regulatory region 23700 1623 bp proximal
Rr35318 regulatory region 35318 579 bp distal
Rr366965 regulatory region 366965 1930 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory