rs46371575 SNP Detail

Summary

• ID
  rs46371575
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99882932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATTATAT GTAGCTTATA
  TATAATATAT ATGACATATA ATATAATCTT TATATTATTT GTGATAGATA GATAGATAGA
  TAGATAGATA GATAGATAGA TAGATAGATA GATAGATAGA TTTCTTGCCA GGAATCGTTG
  TGCATGCTTT TAACCCCAGC ATTAAGGAGG CAGAGGGAGG CAGGTGAGTT AAAGGCCTAT
  M
  TAACCTATAT AGGGAGTTCC AGGCTAACTG GGGCTATGTA GTGGGACCCG GTCATTGCTC
  TGTAAAAGTA AAAATAGATA CTGTTCCCTT AGTGCAAGAA CAGATTTTAT TAATTTTAAC
  CCATGTGTCA CTTAAAATCA TTCCTAACTA GGGATTAATC CACTCTTATA TGAGTCTTCA
  TTTCCCAGCT AGCCTTGATC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132716357	ENSMUSSNP6126406	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss323830202	CHEV_11_99853420	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46371575					SNP	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99882932 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3803	CpG island 3803	1435 bp proximal
Krtap17-1	keratin associated protein 17-1	1128 bp downstream
Tssr110721	transcription start site region 110721	1886 bp downstream