rs46372145 SNP Detail

Summary

• ID
  rs46372145
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:82948481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGCCCTCA AATCCTGTCA
  GTTTGCTACA GAAGCTATCA CAGGGAAAGG AGGAACTCAG TAGTATCCTG TTAAGGAAGA
  AATGCTGACT AATGTTATAT AAAATGCATA TGATACATGG GACATATTAC ATAATTCATG
  TGGAGGGTCA TTGAACTCAG AAGTTTGCAC GTGTTGGGCA AGCACCATGT GATTTTTTTT
  W
  AAAGATCTTT GGGTTATATA AGTATCTCTT AATAGTTTTT TTTATATTGC CTGATTAGGT
  TTCATGATTA TTCTGTGTTC CCACACTCGT CCTATTGTGG ACTCTCTCTC ATTCCCTCCT
  CTCTTTTTCC CATGCCTTCT CCCTTTACCT CTTAGATATA ATTTTCTGTG GCTTCTTTAA
  ACTGTTGATC CTTCTAATAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60904294	NES15955664	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46372145					SNP	T	T	T	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60904294	NES15955664	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:82948481 () rs orientation: forward

Symbol	Name	Function Class
M1ap	meiosis 1 associated protein	within coordinates
Rr632712	regulatory region 632712	1511 bp distal
Rr632713	regulatory region 632713	32 bp distal
Rr632714	regulatory region 632714	298 bp distal