rs46372740 SNP Detail

Summary

• ID
  rs46372740
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81007174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCCTTCT CAGATATAAA
  CTCACATAGT GATAAACAAG ATTCTCTACA AAGAAGTGAA AAATACACAT CATAAAAAAG
  ACAGATTCTT CAACGTATAG ACGATATCAC TCACCGTGCA AAAAAATCAA AGCCAAAGAA
  TCTAAGACCC AAGAGCCCTA AAACTGAAGC AGTGGGGAAA GCAGCAGAAA TACCTCAGGG
  Y
  CAGGCAGAGA AGGGGGCTGA GCCATAGCCA ACAATGAGAA TCAGGAGCTG AAAAGGCAAA
  TTATAGAAGA AGAGATGACC TATAGAATCG AACAAAACTT TGTTAGCTAT ACTGACAGAA
  GGTAAAGCTA GGACACACAA AGATGTAAAA AAAACCAAGA AATCAATAAC CCAATTAATA
  AGTAGGCTAA CCAAATGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62938486	NES17404165	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	C	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46372740					SNP	T	C	T	T	T	C	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62938486	NES17404165	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81007174 () rs orientation: forward

Symbol	Name	Function Class
Gm66613	predicted gene, 66613	within coordinates
Map4k3	mitogen-activated protein kinase kinase kinase kinase 3	within coordinates
Tssr149503	transcription start site region 149503	1006 bp downstream