rs46373785 SNP Detail

Summary

• ID
  rs46373785
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99241804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTCAAGC AGAGGACACT
  AATTCAGGTC CCAGCACATA CAAGAGGCTC GCCAAGTTCA AATAACTCCA GCTCCAGGGG
  ATGGTCTTGG ATACCACATT CATACATATA ATTTTAAATT AAGAATAAAT CTCCAAAAAC
  TTATTTATCA GAGTAAGGTT TTACAACAAT GGGAATGCTG CCGGAGGTCA GAATACCTGA
  R
  TCTCCTTCCT CTGCTCTTGG TCATCTTCTT CTCAGGCTAC CCTGGGATAT CAACCACAAA
  GCCCCTCCTT CCAAGTGCCT TTGAAGAGTC CGCTGCATTC AAATCTTACT AAAGTTTCTG
  AGAAGTCCTA CAGACAAAGG CTGGTAAACA GAATTTAACC CTATGTTGCT CTAATGATTC
  CCTATGGAAC CCATTCCTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61444647	NES16824607	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A		A	A	G	G		A
ss323135619	CHEV_9_99260170	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46373785					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61444647	NES16824607	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99241804 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22193	CpG island 22193	1046 bp distal
Esyt3	extended synaptotagmin-like protein 3	1194 bp upstream
Rr198328	regulatory region 198328	997 bp proximal
Rr206935	regulatory region 206935	1003 bp distal
Tssr91051	transcription start site region 91051	1199 bp upstream