rs46374030 SNP Detail

Summary

• ID
  rs46374030
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:35387023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGTCTTT TCCTCTCCAA
  AAAGTTTCCT GCGTGGGTAC AGAGATGCCA GCTTGACATT TGCCTGGCAT CTTGTTCTCC
  ATTTCCCCCC CAGGAAAGTA GGGGTTAGGG AAGTTTTAGC CGGGGAGAAC AATTCATTTC
  AAAAGCTCAA GCCAACCTGT GTTTGTCTTC CCGACCTCTA GACTATTTTA ATCTTGTAAA
  Y
  GGTAATGATG TGTGTGGGGA ACAATTTTGT TGTTTACTGA AGCAGTTGAA TGATAATTGT
  GGAGACAGAA GAAAGCGGAA GGCATTTCCC ACAGACTCAA TTTCTTGCTG TCAGTCTCTA
  TGCTAATATA GGCTCCCATG TTATGTCTTG TGAATCATGA TGAAAAAACC CCAGAAAGGA
  ACACAGCAGG GGACCAGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60877208	NES15975942	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46374030					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60877208	NES15975942	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:35387023 () rs orientation: forward

Symbol	Name	Function Class
Tssr55592	transcription start site region 55592	1883 bp upstream