rs46375957 SNP Detail

Summary

• ID
  rs46375957
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:28798479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGGGAGAC GGACCAGTGT
  CAGGAGATGA CCTTGGCCCT TTGAACGTGA TCTGGAGTCT GACTCCCCTG AAATCTCAGA
  GCCAGAGGCG GGTGGTTGAT CTGCCCCCTC CCCTGCTCCT ATTTCTCCCA GGACTGGAAC
  AAGGGGAGGA TGGAGAGAGA GCAAAGGGTT GCCTAACGTG GCGTCGCAAA GGCCCATGGG
  R
  TCCTACCAGG CATTAGAGAC TAGGAGCTGC GGGTAGCCAG AGCGGGGGGC GCCGGGCGGA
  GGAGGGTGGG GCAACGGGGA GCAGCCTCGG AGTCCATCTG TCTGCCCCGC GCCCGCAGGG
  CCGGGCACCA GCTGCCGGCG CCCTGGCCTG AGCCAGATGA GTCGGCTCAG TGAGTGCTTC
  GCGGCCTGTC GCGCAGCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss146395062	ENSMUSSNP4926833	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs46375957					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28798479 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Barhl1	BarH like homeobox 1			mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi11393	CpG island 11393			within coordinates
Cpgi11394	CpG island 11394			532 bp proximal
Rr553925	regulatory region 553925			1664 bp distal
Rr553926	regulatory region 553926			863 bp proximal