rs46377338 SNP Detail

Summary

• ID
  rs46377338
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:57391760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGGATGC ATTAAAAGAG
  AAAATTCATG AGTACATGGC CACAGAGGAC CTAATATGTC ACCTCCAAGG AGACCACTCC
  CTTCTGCAAA AGAAACTAAA CCAACAAGAA AACAGGAACA GAGATTTGGG AAGAGAGATT
  GAAAACCTCA CTAAAGAGTT AGAAAGGTAT AGGCACTTTA GTAAGAGCCT CCGGCCTAGT
  S
  TCAACGAAAG AAGAATCTCT GACCCGCAAG TATTTTCTAA AGAAGTTCAA ACGGAAGCAG
  CAGACAGTGA GCCACCAGAC TACAAGAGCC TCATTCCTCT GGAAAGAGCA GTGATCAATG
  GTCAGTTCTA TGAGGAGAAT GAGGACCAGG ATGACGACCC TAATGAGGAG GAGTCTGTGC
  TGTCCTTCAG ATGCAGCCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60466746	NES16455362	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46377338					SNP	C	C	C	C	C	C	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60466746	NES16455362	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:57391760 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cmss1	cms small ribosomal subunit 1			Intron
				Noncoding-Transcript-Variant
Filip1l	filamin A interacting protein 1-like			Coding-NonSynonymous
Rr517339	regulatory region 517339			1972 bp distal
Tssr138840	transcription start site region 138840			1673 bp downstream
Tssr138841	transcription start site region 138841			1618 bp downstream
Tssr138842	transcription start site region 138842			1531 bp downstream
Tssr138843	transcription start site region 138843			706 bp downstream
Tssr138844	transcription start site region 138844			654 bp upstream
Tssr138845	transcription start site region 138845			769 bp upstream
Tssr138846	transcription start site region 138846			873 bp upstream
Tssr138847	transcription start site region 138847			907 bp upstream
Tssr138848	transcription start site region 138848			936 bp upstream