rs46377725 SNP Detail

Summary

• ID
  rs46377725
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98944416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCGGAAGA GCAGTCAGTG TCTTACTGGC TGAGCCATTT
  CTCCAGCCCA CCCCCCCTTT TTTTTTCTTA AAGAGACAGA GTGTGGCTAT CTATGTCCTA
  S
  ATAAGTGTAG GACAGAGTGA ATTCACCCAG CGAGTGAACA TTCTTTTTTT TTTTTTAAAG
  ATTTATTTAT TGATTATATG TAAGTACACT GTAGCTGTC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148463793	ENSMUSSNP4018732	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
ss325079691	CHEV_15_98876966	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46377725					SNP	G	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98944416 () rs orientation: forward

Symbol	Name	Function Class
D15Jcs28	DNA segment, Chr 15, John C. Schimenti 28	1289 bp proximal
Gm41399	predicted gene, 41399	within coordinates
Rr311358	regulatory region 311358	554 bp proximal