rs46379392 SNP Detail

Summary

• ID
  rs46379392
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:67001137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTAGTGAA GCAACCCGCT
  CTGACCCCAA ATAAACAGAC TCAAGACAGG AAGTTAGACC ATTCTAGAGT CCTGGAAACC
  AAAATATTCC TCCCAATTTT TTAGTGGGAC AGTGTCCACT CCTGTCCATG AGCTAGCATC
  CCTGGGGCAT GAGGGACACT TCTGCAGCCT CAGGTCTGCA ATTGGGCTAT TTTTAAGTGA
  K
  CCCAGAACTG TAGCATAACT ACATTTCCAG ATGTATTTAA CAAACTGGAA AGAGGCAGCT
  AAATGATATA TTGGGGTTTG ATTTTCCCAT TCCTGGCCCC CTGGAAACAC CTGTGAAGGC
  AGGCTCCTGC TTCCATCAGA GAGCACCACG GTAAAGCTCA TCCCCATGAG ATGAGCTCTG
  TTCATGGTCT GTGGGTGTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss62440226	NES17246762	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs46379392					SNP	T	T	T	T	T	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62440226	NES17246762	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:67001137 () rs orientation: forward

Symbol	Name	Function Class
Adra1a	adrenergic receptor, alpha 1a	within coordinates
Gm62844	predicted gene, 62844	722 bp downstream
Rr290067	regulatory region 290067	1337 bp distal
Rr293226	regulatory region 293226	64 bp proximal
Rr296052	regulatory region 296052	1515 bp distal
Rr389792	regulatory region 389792	within coordinates