rs46380425 SNP Detail

Summary

• ID
  rs46380425
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97229795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCAAATTT CTCTCATTGT
  ATCCTTTTGG CTTTTAGTAT ATGGAAATTG AATTGTGTGG TAGAAAACTG AATTTCTGGC
  TGAGTAAAAT ATTTGTAGTA AAGATATGGT ATGAGTTTTA TATTAGGAAT ATAGACAGAA
  AAAAAACATT TTATATCATC TTATCCTAGA CACAGAGTAC CCAATGTCAT TATATCCAGG
  Y
  AATAAAAACA AGTTCTCTCT TGAGCTCTCA TGTTTATTCA AGTTAGGAAA TCAGTATCAA
  TTTGCACAGC GTTTTCCTAT TCGTGAATTA AATTTATTCA AGGGTTTTTT CCAAAGGAGC
  CAAACCTTAT CATCAATTTC ATTACATTAT TACCTCAACT ATTATCATGA TTTTTTAAAA
  AGTCACATCA CAGGAATTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss63608906	NES17040826	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T		T		C
ss325076640	CHEV_15_97162345	CHEVERUD	SCREENING_POP	f	SNP										T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs46380425					SNP	T	T	T	T	T	T	C	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63608906	NES17040826	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97229795 () rs orientation: forward

Symbol	Name	Function Class
Pced1b	PC-esterase domain containing 1B	within coordinates
Rr391161	regulatory region 391161	136 bp upstream