rs46381015 SNP Detail

Summary

• ID
  rs46381015
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:91177773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTTTTAA AAGTGCATAT
  AGGAATATGA GAAATTAAAA AAATAAGGAG CAGGAAGAGT GTCCTCACAC CCAGCAGCCA
  CCTCTAACTA TCCCATGGCC TTAACGCAGC TGCAAACCGG TCGGATTCTT TGCGTTCAGG
  AATGGTGCCG GGCACAGGAA CTTAGCTCCA CCAGCAGGCA CTGCACTAGT ACGATATTCC
  K
  AGGGAAGCAA GCCGCTAAAT GAATGGAAAC AAACCGGAAG GCCGCTAGGC GGTCGGGGAT
  GCTTGCGCTT CGGTGACCAA TCAGCAAAGG TCTTGACACA TGGCCCACCC TCAGGCCGTG
  CTCTTCACCA ATGAACGAGG GCCGACTAGT TGACCTGTGT ATGTCCTGTG ACTGTCCACG
  AGTGGAGCTG CCAATAAAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60767811	NES16403366	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	T	G		T	T	G	T
ss144943411	ENSMUSSNP6663551	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46381015					SNP	T	T	T	T	T	T	T	T	T	T	G	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60767811	NES16403366	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91177773 () rs orientation: forward

Symbol	Name	Function Class
Cpgi571	CpG island 571	within coordinates
Rr366958	regulatory region 366958	within coordinates
Tssr8065	transcription start site region 8065	142 bp upstream
Tssr8066	transcription start site region 8066	246 bp upstream
Tssr8067	transcription start site region 8067	260 bp upstream
Tssr8068	transcription start site region 8068	431 bp upstream
Tssr8069	transcription start site region 8069	524 bp upstream
Tssr12938	transcription start site region 12938	within coordinates
Tssr12939	transcription start site region 12939	1321 bp downstream
Ube2f	ubiquitin-conjugating enzyme E2F (putative)	within coordinates