rs46381394 SNP Detail

Summary

• ID
  rs46381394
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88192098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GACCTAGACA CGAGTCCACT CTCACAGTCA CTTCCATAGT
  GATTTCTGGA GCAGGCCACC AAGGCACACC ACGATAGCAG TTTGGTCTAG GAAAGTCAAG
  G
  GGGCTCACGA GGTTGAGGCA GCTAGACAAA CAGCTCAAGG CCAAGAGCAA AGGGAGATAG
  CTGGTGGGAA TACCCTGCCA GGGATTCCTG CCACACCAGG C                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss144899258	ENSMUSSNP200596	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs46381394					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88192098 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	within coordinates
Rr35066	regulatory region 35066	within coordinates
Tssr12870	transcription start site region 12870	442 bp downstream