rs46384923 SNP Detail

Summary

• ID
  rs46384923
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:21297344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTCTCTG TAACATTTTG
  TTCTCGCCCC TCCTCTCTCT TCCCCTCCCC TTTCCTCCCC TGCCTCTCTT CTTGTGTCAT
  CTCTTCTCCC TTCCCTTTAC TCCCTCTCTT GCTTTCTTCC CCCACTCCAT GGGCAAGCAT
  TTTAAATAAC CAGATTGCGA TTTGTTTTCC ACTTTGAGTT TAACATCTCT CATGCTGGGC
  W
  CTGGTTTTCA TTTATTATCA CAAATCTACC TCCTGGCGAG TATAATCGGT GCGGCCATTA
  TCCCATACTG TCTTGGCGTT GACCCTGCCA GTTAGTAAGG TCTCTGCCAC TAATTGCGAT
  GTGACAAGAA CCAGTCTCAG TCTCAATGTT AGAAGATGCC AGAGGAGTCA CAGAACAGAC
  TTTTGTAGGT GTGTGTATGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52168159	NES15221846	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46384923					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52168159	NES15221846	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:21297344 () rs orientation: forward

Symbol	Name	Function Class
1700021A07Rik	RIKEN cDNA 1700021A07 gene	within coordinates
Cpgi1360	CpG island 1360	1903 bp distal
Rr428711	regulatory region 428711	1960 bp distal
Rr428712	regulatory region 428712	16 bp distal
Rr428713	regulatory region 428713	197 bp distal
Tssr92636	transcription start site region 92636	1985 bp downstream
Tssr92637	transcription start site region 92637	1964 bp downstream