rs46386226 SNP Detail

Summary

• ID
  rs46386226
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13427024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGATTAA AGGTGTGCAC
  CATCACTGCC CCGCTCAGGT TCAACTCTTT TTTTTTATTT TCTGAGACAG TGTTTCTCTG
  TATAGCCCTG GCTGTCCTGG AACTCACTTT GTAGACCAGG CTGGCCTCGA ACTCAGAAAT
  CCGCCTGTCT CTGCCTCCGG AGTGCTGGGA TTAAAGGCGT GCACCACCAC ACCCGGCCAG
  G
  TTCAACTCTT TTAAGACTTT TTGTTTTGCT AAAAAAGCAA TAGTGCTTCG ATTATACCTT
  TGAATCTCTT CCCCCTCCCT TTTGTTGTTG TTTTGTTTTC TGTTTGTATG TCTTTTGTTT
  TTTGAGACAG GGTCTCAATA TGAAGCTCTG GGTGTTCTGG ACCTTACCTC CAACTCAGAG
  AGCTGCCTGT CTCTGCTTCC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146822612	ENSMUSSNP2805361	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs46386226					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13427024 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	1627 bp upstream
Cpgi1315	CpG island 1315	1571 bp proximal
Pex3	peroxisomal biogenesis factor 3	within coordinates
Rr368928	regulatory region 368928	1659 bp upstream
Rr427802	regulatory region 427802	1287 bp proximal
Rr427803	regulatory region 427803	1548 bp proximal
Rr427804	regulatory region 427804	1625 bp proximal
Rr427805	regulatory region 427805	1830 bp proximal
Tssr92399	transcription start site region 92399	1907 bp upstream
Tssr92400	transcription start site region 92400	1965 bp upstream
Tssr96771	transcription start site region 96771	1575 bp downstream
Tssr96772	transcription start site region 96772	1719 bp downstream
Tssr96773	transcription start site region 96773	1783 bp downstream
Tssr96774	transcription start site region 96774	1831 bp downstream
Tssr96775	transcription start site region 96775	1860 bp downstream
Tssr96776	transcription start site region 96776	1875 bp downstream