rs46386344 SNP Detail

Summary

• ID
  rs46386344
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24077696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAT GTTGAATGGT TTGTGTGTGT
  R
  CCTCTATCTT TCCTTCCTCA GGGAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148072326	ENSMUSSNP576379	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss321491948	CHEV_5_23378516	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46386344					SNP	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24077696 () rs orientation: forward

Symbol	Name	Function Class
Gm9534	predicted gene 9534	within coordinates
Gm57318	predicted gene, 57318	within coordinates
Gm71416	predicted gene, 71416	1996 bp upstream
Rr608201	regulatory region 608201	1506 bp proximal
Tssr50297	transcription start site region 50297	1333 bp upstream