rs46386978 SNP Detail

Summary

• ID
  rs46386978
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47038793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCCCTCT TCTGGTGTCT
  GAAGACAGCT ACAGTGTACT TACATATAAT AATAAATAAA TCTTAAAAAA AAAAAAAAAA
  GAATTTTCCT TATCAAGTAG CAAAAAAATT TTTTGAGAGT TTTTTTTTTT TTGTTTTTTG
  TTTTTTTTTT AGCCTGGTTT AAACAGTGAG TTCCAAGACA GCTGGGGCTA CAAAGAGAGA
  T
  TCTGTTTCAA AAAAATTTTT TTTCAAAATT TAATTTCATG TGTCGTGCCT GAATATGTGC
  ATCATGTGCA TACCTTGTGT CTGCAGACCC CAGAGAGGGT GCTGGGCACC AAATTTGGGT
  CCTCTGTAAG AACATGTGCC ATCTCCCCAG CTGCCTCTTA TTAGAAACAG GGTCTCCTAA
  TGTAGCCCTG CAGGGCCTGG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss145701284	ENSMUSSNP1147029	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs46386978					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47038793 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9242	CpG island 9242	836 bp proximal
Cpgi9243	CpG island 9243	1881 bp proximal
Gm65860	predicted gene, 65860	1180 bp upstream
Gnmt	glycine N-methyltransferase	within coordinates
Rr331605	regulatory region 331605	1993 bp distal
Rr331606	regulatory region 331606	193 bp distal
Rr331607	regulatory region 331607	208 bp proximal
Rr339923	regulatory region 339923	407 bp proximal
Tssr148377	transcription start site region 148377	1544 bp upstream
Tssr148378	transcription start site region 148378	1525 bp upstream
Tssr148379	transcription start site region 148379	1512 bp upstream
Tssr148380	transcription start site region 148380	1149 bp upstream
Tssr148381	transcription start site region 148381	495 bp upstream
Tssr148382	transcription start site region 148382	1291 bp downstream