rs46387016 SNP Detail

Summary

• ID
  rs46387016
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54414700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAG TATTTCATCA ATTATCCTCA
  R
  TGTGTGAAAC TAGAACATAA TAGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss62393395	NES17236664	PERLEGEN	MM_PANEL2	f	SNP		A	A	G			G	A	A
ss139557256	ENSMUSSNP321158	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A			A
ss324635258	CHEV_14_54796918	CHEVERUD	SCREENING_POP	f	SNP						A				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs46387016					SNP	A	A	A	G	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62393395	NES17236664	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54414700 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
Rr492148	regulatory region 492148	504 bp distal
Tcra	T cell receptor alpha chain	within coordinates
Traj40	T cell receptor alpha joining 40	678 bp upstream
Traj41	T cell receptor alpha joining 41	918 bp downstream
Traj42	T cell receptor alpha joining 42	1407 bp downstream
Tssr125566	transcription start site region 125566	1261 bp downstream
Tssr125567	transcription start site region 125567	1024 bp downstream
Tssr125568	transcription start site region 125568	1007 bp downstream
Tssr125569	transcription start site region 125569	987 bp downstream
Tssr125570	transcription start site region 125570	958 bp downstream
Tssr128543	transcription start site region 128543	581 bp upstream