rs46388683 SNP Detail

Summary

• ID
  rs46388683
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:57527740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTATCTT CATTTTGTTG
  AAGATGTATT GCTTTGTGGG ATGGGACTAT AGGTGCAGGA AAGCCAATGT CCAGTATGAG
  AAAAGCCCTA GGCTCTCTCC CTCACTCTTT CCTCACACAC TGCCCAGCTG GCCTCCATCC
  TCCTCCTTCT AGCCTCCCAG GGGACAAGGT TGGGGGCACA GTCTTTGGGC CACTCTTCTA
  R
  CAAACAGGTG CAGCCACCCA TCACTGGGCA GTTGTGCTCC CCCACCCCCA CCCGAGTGTC
  ACCCTACAAG CCACCACTCA TTCCTGGCCA GGTCCAGCAC TGGGCAGTTG TGTCCCCCCA
  CCCCACCCGA GTGTCACCCT ACAAGCCACC ATTCACTCCT GGCCAGGCCC AGCACTGGGC
  AGTTGTGTTC CCCCATCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62812226	NES17355769	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46388683					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62812226	NES17355769	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57527740 () rs orientation: forward

Symbol	Name	Function Class
C3	complement component 3	Intron
Gm65552	predicted gene, 65552	within coordinates
Rr405394	regulatory region 405394	1255 bp downstream
Rr529295	regulatory region 529295	1382 bp distal
Tssr145377	transcription start site region 145377	1450 bp upstream
Tssr148933	transcription start site region 148933	1848 bp upstream
Tssr148934	transcription start site region 148934	544 bp upstream
Tssr148935	transcription start site region 148935	301 bp downstream
Tssr148936	transcription start site region 148936	318 bp downstream
Tssr148937	transcription start site region 148937	341 bp downstream
Tssr148938	transcription start site region 148938	612 bp downstream
Tssr148939	transcription start site region 148939	1175 bp downstream
Tssr148940	transcription start site region 148940	1510 bp downstream
Tssr148941	transcription start site region 148941	1590 bp downstream