rs46389831 SNP Detail

Summary

• ID
  rs46389831
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24006354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCA TAACTCCAGT TCCAGGGGAT
  C
  AGACGCCCTC TTCTGGTCTC TGTCC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145332745	ENSMUSSNP5659359	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss325327351	CHEV_17_23924347	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46389831					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24006354 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8693	CpG island 8693	1060 bp distal
Flywch2	FLYWCH family member 2	1299 bp upstream
Tssr146663	transcription start site region 146663	1297 bp upstream
Tssr146664	transcription start site region 146664	1258 bp upstream
Tssr146665	transcription start site region 146665	1143 bp upstream