rs46390010 SNP Detail

Summary

• ID
  rs46390010
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96318854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTCATGA CGAACTGTCC
  CCTCAGTTAC ACACACCTGT AACCCCAACA AGAAGGAGGA TCAGAAGTCC AAGGCCAGCC
  TTGTCCACAT AGTGAGTTTG AGGCCAGCCT AAACTACATG AAACCTTGGG TTAGAAAACA
  AAAACAAACA AACCAAAACC ACAAATAAAC GAATGGGCCT GTCGTCTGTG CAGTCCTTGG
  R
  CTCTTGGTAT AGTGGACACA AGACCCATTC CGACTGATTT TTCAGGACTG AATTACATAT
  TGGTCCTAAA GGGCAGATGA GGAATTTGAA GGGCCCTCCG GGAGGTATTT CCCTGAGGAG
  ACTGGAGACA GAGGTGCATG CCAAACACCC ACATTCCATC AGTCTCCAGC TGAAAAAATT
  AATTGCCTGC CCTTTATGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss61442175	NES16828180	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		G	G	A		G
ss323108971	CHEV_9_96337220	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs46390010					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61442175	NES16828180	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96318854 () rs orientation: forward

Symbol	Name	Function Class
BC043934	cDNA sequence BC043934	within coordinates
Cpgi22163	CpG island 22163	227 bp proximal
Cpgi22164	CpG island 22164	702 bp proximal
Gm50488	predicted gene, 50488	within coordinates
Gm68666	predicted gene, 68666	879 bp upstream
Rr368835	regulatory region 368835	1195 bp upstream
Rr684963	regulatory region 684963	389 bp proximal
Rr684964	regulatory region 684964	890 bp proximal
Rr684965	regulatory region 684965	1016 bp proximal
Tssr90963	transcription start site region 90963	1360 bp downstream