rs46390428 SNP Detail

Summary

• ID
  rs46390428
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108694020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTG TATTTAGAAT AGAACTGTAT
  G
  TACAGAGGGA GACTGGAGTG CTAGG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147191163	ENSMUSSNP4019117	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321252880	CHEV_4_108509428	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs46390428					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108694020 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14565	CpG island 14565	1683 bp distal
Rr376990	regulatory region 376990	1756 bp downstream
Rr597227	regulatory region 597227	1146 bp proximal
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)	within coordinates