rs46390574 SNP Detail

Summary

• ID
  rs46390574
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:89341459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCATAAA GCTGGAGTCC
  TGAGCTGTTG AGGTCAGAGG CTGCAGGCAG TAAGGAAGGC ATAAGGCAAG GAATGTATAC
  TGTGTTCTCC ACACAGAGCA AACATTCAGT AGTACATCCT GCTTGGCTGC TGTTGTGGTT
  AGCTGTGAAC GCTCTCTCCG AGGGGAGTGT TAGATTATAT TCCCTTTCCT ATCATTTCTG
  R
  CCCTGGACAC AGTGTCTGGC ACATAGTAAG CATGAAATAA ATGTGTGCTA AATAGAAGGG
  GGTAGAAAAT TTGCTTTGCC ACACCATGAA AGTAATTTCT CTCTCTGAAT ACAGTGTCAG
  CCGCTTTGAA ACACCACGCT TAAGGAAAAT GAACTGCTGC CAAGTCTGTG ATCAAAAGTA
  TGCACATCGT TGTAATTACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61302152	NES16913848	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46390574					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61302152	NES16913848	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:89341459 () rs orientation: forward

Symbol	Name	Function Class
Nr1h4	nuclear receptor subfamily 1, group H, member 4	within coordinates
Tssr98874	transcription start site region 98874	1034 bp downstream