rs46391155 SNP Detail

Summary

• ID
  rs46391155
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:167199991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GGCAGGAGCT TTAGGTATGA GGCTGATGCC AGATAAGTTT TTATTATATT
  W
  AAAAAAAAAA AAAAACCAGT GCAACTGGAA ATCAGGGTGA GTCGCTGGAG           
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146037864	ENSMUSSNP6085711	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46391155					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167199991 () rs orientation: forward

Symbol	Name	Function Class
Gm71125	predicted gene, 71125	1739 bp upstream
Mgst3	microsomal glutathione S-transferase 3	mRNA-UTR
Rr422700	regulatory region 422700	1730 bp distal
Rr422701	regulatory region 422701	1986 bp distal
Rr422702	regulatory region 422702	1595 bp proximal
Rr422703	regulatory region 422703	1750 bp proximal
Tssr14852	transcription start site region 14852	within coordinates
Tssr14853	transcription start site region 14853	1099 bp downstream