rs46391666 SNP Detail

Summary

• ID
  rs46391666
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:98886652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACAGCAG TAGGAATGCG
  CGAAGTGGGG CGTAGTGAGA CAGGAGACAC AACCCGGGTC AATTTAGGTG GGCTTTTTTT
  TTTTTTTTTT TTGGCACTTA CAGGGTAAGC AACCGGATGG TTGCTAGGCA ACTGCATCTC
  TCGTTAGCAC GGAGGACCCT GTCCGAGGTG TCTAAGTCAC TACCTGTTTC TTTTAAAGGC
  T
  TGGTGGCTTT TCAAAGTTAA TGCAATCTAT TGTCATTAAA AGAACACTTT TTTGCCAGCA
  ATTCTTTGCA AACTCTCTGG CTGAGGTCGG CTCTCAGAGG CTTTCCCGTC CCCTGTTTTC
  AGGCGCGCTG CGGACACCTC CTTAGCCAGG CCCCGCCGTT GCGCGTTGCT CAGCAAAGCC
  AGACGCCTCC CGCTCGCTGC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss137987692	ENSMUSSNP4586762	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs46391666					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:98886652 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4974	CpG island 4974	15 bp proximal
Rr403444	regulatory region 403444	within coordinates
Rr470976	regulatory region 470976	within coordinates
Rr470977	regulatory region 470977	17 bp proximal
Rr470978	regulatory region 470978	1383 bp proximal
Tssr114655	transcription start site region 114655	138 bp upstream
Tssr114656	transcription start site region 114656	174 bp upstream
Tssr114657	transcription start site region 114657	227 bp upstream
Tssr114658	transcription start site region 114658	251 bp upstream
Ttc8	tetratricopeptide repeat domain 8	181 bp upstream