rs46392599 SNP Detail

Summary

• ID
  rs46392599
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134024302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAGTGCA CACTGCTTTT
  GCAGAGGACC CAAGTCCAGC TCCCAGAACC CACATCAGGA AGGCAGCTCA AGCCACCTGC
  AGTTCCAGCT CCGGGGATCC AACATCCTCT TCCAGCCTCT GTGAGTGCCC ACATATACGT
  GCACATACAC ACAGAGATGC ACAAATATTT TTTAAACAAA ACATAAGAGT TATTATAGAC
  S
  CACACCTCTA ATCAAACACA TACAAGACAT CCATAGAAAG ATCAAGAGTT TGAAACTAAC
  CGAGACTACC TTAAAAATAA TAATATATTA TTATTATTAA ATGTCAAAAA ATCTCTGGGG
  ACTGGAATGT TGGAACAGTG GGCAAAGTGC CTGTCACACA ACCGTGAGAA CTTGAGTTTG
  GATCCCCAGA ACACACATAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60847178	NES16015950	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46392599					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60847178	NES16015950	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134024302 () rs orientation: forward

Symbol	Name	Function Class
D5Mit141	DNA segment, Chr 5, Massachusetts Institute of Technology 141	850 bp proximal