rs46392642 SNP Detail

Summary

• ID
  rs46392642
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46250145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTGGATT CTGTGCAGTT
  CTGGAAACAG AGTAGCAAAC ACACAGCTAG CCAAACAAGC AGAGGACAAG AAATACAATG
  TTAGGGAGAC TCAGAAAAAT GATACACACA GGAAACAGAG GGAGGCAGTG CTTAACATAG
  AGGGGGTGGT GGTTAACTTG GGGTGGGGGT AGGCTTCGGG GCAGGGCTTA GGCAGGTAAT
  Y
  GGCTGGTGTT CTTTTCAGCC TGCATCTATA TTCCAACATT CTTCGGGGTG TGTGGTACAT
  ACTGTGATTA ATAAAAGTAC TGGGTTGGGT GTGGTGCTAT ACCCTATAAT CCCTGTACTT
  GAGAGGTGGA GACAGGAAGA CAGTTTAAAG GGCTATAGAG TGCGTTTAGA CTTGGCCTGA
  ACTAACCAAG AATAACAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61392159	NES16761209	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46392642					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61392159	NES16761209	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46250145 () rs orientation: forward

Symbol	Name	Function Class
Rr383308	regulatory region 383308	within coordinates
Rr678124	regulatory region 678124	906 bp distal
Rr678125	regulatory region 678125	201 bp distal