rs46393058 SNP Detail

Summary

• ID
  rs46393058
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21423458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTC CCGTCCACCA CCTCTCTGGG
  M
  AACCTTCTCC GAAAGAGCGT TCGGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52314562	NES15371785	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		A	C	A	A		C
ss323931432	CHEV_12_21379318	CHEVERUD	SCREENING_POP	f	SNP										C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46393058					SNP	C	C	C	C	C	C	C	C	C	C	A	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52314562	NES15371785	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21423458 () rs orientation: forward

Symbol	Name	Function Class
Adam17	a disintegrin and metallopeptidase domain 17	within coordinates
Cpgi4477	CpG island 4477	within coordinates
Gm49586	predicted gene, 49586	216 bp upstream
Rr463712	regulatory region 463712	18 bp distal
Rr463713	regulatory region 463713	72 bp proximal
Rr463714	regulatory region 463714	86 bp proximal
Rr463715	regulatory region 463715	227 bp proximal
Rr463716	regulatory region 463716	266 bp proximal
Rr463717	regulatory region 463717	754 bp proximal
Tssr112932	transcription start site region 112932	233 bp upstream
Tssr112933	transcription start site region 112933	795 bp upstream
Tssr115856	transcription start site region 115856	24 bp downstream
Tssr115857	transcription start site region 115857	44 bp downstream
Tssr115858	transcription start site region 115858	69 bp downstream
Tssr115859	transcription start site region 115859	93 bp downstream
Tssr115860	transcription start site region 115860	149 bp downstream