rs46393385 SNP Detail

Summary

• ID
  rs46393385
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177808678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATTA GCTTGTGGGT ATTATCTTAA
  W
  TAATTGATAT AAGAGGGCCC AGTCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146351689	ENSMUSSNP3455491	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46393385					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177808678 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1085	CpG island 1085	1976 bp proximal
Gm69850	predicted gene, 69850	within coordinates
Rr14372	regulatory region 14372	878 bp distal
Rr25806	regulatory region 25806	162 bp proximal
Rr29061	regulatory region 29061	1722 bp proximal
Rr396636	regulatory region 396636	1932 bp upstream