rs46393599 SNP Detail

Summary

• ID
  rs46393599
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51370459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATATTGCAAT ATTTCCCATC TCCTAGAGTA TTAGTATAGT
  CATAGGAAGG AATTTAACAG TCCCTTTCTT CCTCTTAAAG TTTCTATTGT TGGAGCTTTC
  Y
  CATCCTCCTA GCAGATGCTT TTTCAATTCA TGCAGCTCAA AGAGAGGCCA ACTTACAAGT
  GCTTTCAACA GCACCAGACC CAACACACAG AGATAGACAC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52288626	NES15304573	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46393599					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52288626	NES15304573	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51370459 () rs orientation: forward

Symbol	Name	Function Class
Gm40645	predicted gene, 40645	within coordinates
Gm49339	predicted gene, 49339	within coordinates
Lilrb4a	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	within coordinates
Tssr93270	transcription start site region 93270	1622 bp downstream
Tssr93271	transcription start site region 93271	1504 bp downstream
Tssr93272	transcription start site region 93272	1449 bp downstream
Tssr93273	transcription start site region 93273	1178 bp downstream
Tssr93274	transcription start site region 93274	645 bp downstream
Tssr93275	transcription start site region 93275	512 bp downstream
Tssr93276	transcription start site region 93276	458 bp downstream
Tssr93277	transcription start site region 93277	410 bp downstream
Tssr93278	transcription start site region 93278	374 bp downstream
Tssr93279	transcription start site region 93279	218 bp downstream
Tssr93280	transcription start site region 93280	218 bp upstream
Tssr93281	transcription start site region 93281	258 bp upstream
Tssr93282	transcription start site region 93282	282 bp upstream
Tssr93283	transcription start site region 93283	359 bp upstream
Tssr93284	transcription start site region 93284	693 bp upstream
Tssr93285	transcription start site region 93285	918 bp upstream
Tssr93286	transcription start site region 93286	1032 bp upstream
Tssr93287	transcription start site region 93287	1394 bp upstream
Tssr93288	transcription start site region 93288	1654 bp upstream
Tssr93289	transcription start site region 93289	1722 bp upstream
Tssr97556	transcription start site region 97556	106 bp downstream
Tssr97557	transcription start site region 97557	471 bp downstream
Tssr97558	transcription start site region 97558	1658 bp downstream