rs46393833 SNP Detail

Summary

• ID
  rs46393833
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9930943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGAAGCC TAGGGCATTG
  CTCGTGAATG CTTCACTACC TCCCCTTCCT TTTCTCTCTC TACCTTTCTT TCTGTCGCCC
  TAAACAAATA ATCTCTTCAA CCCAGCTGCA CTGCCAGTGG CATCTCCTCC TCAGTCTCCC
  CAGGTGCGTA CTGGGAAGAG CTGTTGCAAC GGAGGAAACC CAAACTGCCA AGAGCAGGAA
  R
  CCTGTGTGAA CGAGGAGGCC AGACCAGGAA ATGGGTGTAG CACACTTCAC CGCCAAACCA
  AAGATACGGT TCCACAACCT GCTGCCAGTT TCCGGCTGTG GGGCCTGGCA GCCTCTGGGC
  CAGGTACTCC CATCGTCCTC AGCGTGTGTA TGCACTCTGA CCAAATATGG AATCAAAGGC
  AAGACACGCA TGTGAAATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60370072	NES15868292	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46393833					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60370072	NES15868292	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9930943 () rs orientation: forward

Symbol	Name	Function Class
Gm56771	predicted gene, 56771	within coordinates
Rr367411	regulatory region 367411	within coordinates
Rr573525	regulatory region 573525	within coordinates