rs46393933 SNP Detail

Summary

• ID
  rs46393933
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:37884788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCCGCTGT CGGCCAGTGC
  AGAGCAAGCT CTGATGCCCC GATCCCTCAG TCTCTAAGCT GCAATTTCCT GCGCAGAAAC
  GAATACACAC ACCAAGGGGA ACTCTCACTC ATACAGACTA AGACACCGAT TCCCAGGACA
  AAACTGGGGT CCCGCTGTCC CGAGCCAAAA GGACCTCCAC CCTCGTAGGC TGAACTCTCT
  Y
  CTACTGTGAA GATCTGAAGA CCTACAGGGG ACCTGAGCCA GCAATGGGAG GGAGCAGCGC
  GCGGAGGAAG CGCCCCGGCC GCCCGCAGGT ACTGTTTATC CTGCTGCTGC CTTTGTTCTG
  TCCCGCGCTG GGCCAGCCGG TCCGCTACTC CATCCCTGAG GAGCTGGACC GCGGGTCGGT
  GGTGGGGAAG CTCGCCAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LG/J	LP/J	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	SJL/J	SWR/J	WSB/EiJ
ss400304096	MGP_WTSI_18_37911389	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LG/J	LP/J	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	SJL/J	SWR/J	WSB/EiJ
rs46393933					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400304096	MGP_WTSI_18_37911389	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:37884788 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9945	CpG island 9945	1382 bp proximal
Gm26672	predicted gene, 26672	within coordinates
Gm37388	predicted gene, 37388	Intron
Gm38666	predicted gene, 38666	Intron
Gm38667	predicted gene, 38667	Intron
Gm53048	predicted gene, 53048	within coordinates
Pcdha4b	protocadherin alpha 4B	Intron
Pcdhga1	protocadherin gamma subfamily A, 1	Intron
Pcdhga2	protocadherin gamma subfamily A, 2	Intron
Pcdhga3	protocadherin gamma subfamily A, 3	Intron
Pcdhga4	protocadherin gamma subfamily A, 4	Intron
Pcdhga5	protocadherin gamma subfamily A, 5	Intron
Pcdhga6	protocadherin gamma subfamily A, 6	Intron
Pcdhga7	protocadherin gamma subfamily A, 7	Intron
Pcdhga8	protocadherin gamma subfamily A, 8	Intron
Pcdhga9	protocadherin gamma subfamily A, 9	Intron
Pcdhga10	protocadherin gamma subfamily A, 10	Intron
Pcdhgb1	protocadherin gamma subfamily B, 1	Intron
Pcdhgb2	protocadherin gamma subfamily B, 2	Intron
Pcdhgb4	protocadherin gamma subfamily B, 4	Intron
Pcdhgb5	protocadherin gamma subfamily B, 5	Intron
Pcdhgb6	protocadherin gamma subfamily B, 6	Intron
Pcdhgb7	protocadherin gamma subfamily B, 7	mRNA-UTR
Rr536317	regulatory region 536317	125 bp distal
Tssr150733	transcription start site region 150733	83 bp downstream