rs46394153 SNP Detail

Summary

• ID
  rs46394153
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:34843737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GGGCTAGGTG AATCCAGTTT CGCAATCCGG TGGTTTTGGT
  GAGCTGGATC ACCATATAAA TTTAAATTGT CAGGAAATTC CTAAGTCGTA AAACTTCTTA
  R
  GTGCAATTTC TCCTGCCTTC TGTTCTCCCT TCCCTTTTCT CTTTCTTTTC CCGTTTTTTT
  TTTTTTTTTT TTTTTTTTTC TTTTTTCTTT TTGACCAGAA C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147971625	ENSMUSSNP2903254	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46394153					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:34843737 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8220	CpG island 8220	63 bp distal
Gm21691	predicted gene, 21691	1031 bp upstream
Hacd2	3-hydroxyacyl-CoA dehydratase 2	within coordinates
Rr404796	regulatory region 404796	930 bp downstream
Rr515294	regulatory region 515294	1122 bp distal
Rr515295	regulatory region 515295	929 bp distal
Rr515296	regulatory region 515296	46 bp distal
Rr515297	regulatory region 515297	1110 bp proximal
Tssr138201	transcription start site region 138201	927 bp downstream
Tssr138202	transcription start site region 138202	888 bp downstream
Tssr138203	transcription start site region 138203	92 bp upstream