rs46395399 SNP Detail

Summary

• ID
  rs46395399
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:85699196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACC TGTGCCAGGG TCCAGTACTG
  R
  TCTCTGCACA CACCCCGGGA TAATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60245669	NES15750944	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	A	G	A	A	A	G	A	G	G	G
ss148467970	ENSMUSSNP255854	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46395399					SNP	G	A	G	G	G	A	G	A	A	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60245669	NES15750944	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:85699196 () rs orientation: forward

Symbol	Name	Function Class
Adamts5	ADAM metallopeptidase with thrombospondin type 1 motif 5	1183 bp upstream
Cpgi8391	CpG island 8391	1836 bp distal
Cpgi8392	CpG island 8392	998 bp distal
Gm46558	predicted gene, 46558	within coordinates
Gm60185	predicted gene, 60185	1908 bp upstream
Rr325517	regulatory region 325517	195 bp distal
Tssr141916	transcription start site region 141916	1999 bp upstream
Tssr141917	transcription start site region 141917	1675 bp upstream
Tssr141918	transcription start site region 141918	1617 bp upstream
Tssr141919	transcription start site region 141919	1563 bp upstream
Tssr141920	transcription start site region 141920	1237 bp upstream
Tssr141921	transcription start site region 141921	1175 bp upstream
Tssr141922	transcription start site region 141922	946 bp upstream
Tssr141923	transcription start site region 141923	480 bp upstream